PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK28565.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB
Protein Properties Length: 220aa    MW: 23739.2 Da    PI: 9.6191
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK28565.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.22.2e-191358147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd+ l ++v+++G+++W++I++ ++ gR++k+c++rw + 
        PK28565.1 13 KGPWSPEEDDSLQKLVEKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 58
                     79******************************.***********985 PP

2Myb_DNA-binding55.31.5e-1767109347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEd+ +++a++++G++ W+tIar ++ gRt++ +k++w++ 
        PK28565.1  67 AFTAEEDDTIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 109
                      79******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.318863IPR017930Myb domain
SuperFamilySSF466894.21E-3210106IPR009057Homeodomain-like
SMARTSM007171.0E-161261IPR001005SANT/Myb domain
PfamPF002492.5E-191358IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-261466IPR009057Homeodomain-like
CDDcd001676.04E-161557No hitNo description
SMARTSM007171.6E-1464112IPR001005SANT/Myb domain
PROSITE profilePS5129420.5465114IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-2367113IPR009057Homeodomain-like
CDDcd001678.26E-1267110No hitNo description
PfamPF002493.7E-1567109IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MATITRKEMD RIKGPWSPEE DDSLQKLVEK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS  60
PQVEHRAFTA EEDDTIIRAH ARFGNKWATI ARLLNGRTDN AIKNHWNSTL KRKCSTMLEE  120
TDNGHGHVSG GGGGGGRAGG YDCNYPQPLK RSVSAGSGIP VSTGLYMNHP GSPSGSDVSD  180
SSVPTVGCTT LSPSHVFRPV PRTGGVLVET ASSSNNNNNX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-41121143105MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-41121143105C-Myb DNA-Binding Domain
1msf_C2e-41121143105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00632PBM25215497Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015963920.11e-105PREDICTED: transcription factor MYB44-like
RefseqXP_016201689.11e-105PREDICTED: transcription factor MYB44-like
SwissprotQ9FDW12e-83MYB44_ARATH; Transcription factor MYB44
TrEMBLV5T7X21e-105V5T7X2_ARAHY; Putative MYB-related protein 20
STRINGPOPTR_0005s18620.11e-104(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.17e-81myb domain protein 73